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Debugger configuration is not saved with NB 3.5 RC1. The switches of the filter toolbar (private, static, inherited, etc.) should be saved.
should be solved to nb40
The filter toolbar will not be included in the next version (its functionality may be), depending on Issue #37886. I leave the target milestone to 3.6 and wait for resolution to #37886.
The filter toolbar has been removed from NB though the missing functionality may return in future releases.
Verified ... and Closing all issues resolved into NetBeans 6.7 and earlier.