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I could have sworn that this used to work fine, but it doesn't now (061113): I delete a folder (a project) in the Favorites tab, and it is gone... but when I Update the parent folder, it comes back. I delete it again and try to Commit the parent folder but the files do not appear as deleted.
Workaround is to delete individual files rather than folders, though this leaves behind .cvsignore files since you cannot select them in the Favorites tab.
Appears to be impossible to fully delete a folder from CVS if it has .cvsignore files in it. Although you can physically delete the folder, the IDE does not consider the parent folder to be modified and so you cannot commit the removed .cvsignore files. It works fine in NB 5.5, I just tried it, so this is a regression.
Should work now. /shared/data/ccvs/repository/javacvs/cvsmodule/src/org/netbeans/modules/versioning/system/cvss/CvsVersioningSystem.java,v <-- CvsVersioningSystem.java new revision: 1.62; previous revision: 1.61 /shared/data/ccvs/repository/javacvs/cvsmodule/src/org/netbeans/modules/versioning/system/cvss/FilesystemHandler.java,v <-- FilesystemHandler.java new revision: 1.24; previous revision: 1.23 /shared/data/ccvs/repository/javacvs/cvsmodule/src/org/netbeans/modules/versioning/system/cvss/util/Utils.java,v <-- Utils.java new revision: 1.50; previous revision: 1.49