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Running status of the server is not reliable (just for the first time) when the weblogic is started outside the IDE.
Increased the socket timeout which causes the fail. Checking in src/org/netbeans/modules/j2ee/weblogic9/optional/WLStartServer.java; /cvs/serverplugins/weblogic9/src/org/netbeans/modules/j2ee/weblogic9/optional/WLStartServer.java,v <-- WLStartServer.java new revision: 1.23; previous revision: 1.22 done