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From the design view, we currently have the ability to Toggle Breakpoints individually at various scopes (including the process itself) and on different activities. Once these breakpoints are set, these can be removed by toggling off (Right-click and select Toggle Breakpoints or just highlight and use CTRL-F8). This ticket is for an enhancement request to allow all breakpoints to be quickly and easily deleted, disabled or re-enabled. This can apply either to within a particular selected scope or at the process level to apply to all breakpoints in the BP. Similar functionality is available in the Breakpoints window (hence the lower priority of this ticket) but adding these three options will improve usability in my opinion.
Don't see easy way to implement it in Sierra.
I have added three additional buttons to the design view toolbar -- Enable/Disable/Delete breakpoints. Pressing either of them will lead to enabling/disabling.deletion of all breakpoint on/within the selected element. If no element is selected the whole process becomes the scope of these actions. I hope this does resolve the issue.
verified in NetBeans IDE Dev (Build 200802060003)