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There is a way to close the GlassFish V3 log window such that the underlying output window streams are close and then never reopened. This kills the log view for the session (must restart NetBeans to get it back.)
Raising to P2 status due to severity and because it was reported by NetCAT (FishCAT, actually, https://glassfish.dev.java.net/issues/show_bug.cgi?id=6106). The problem is that the V3 log viewer caches the IO panel (for ease of retrieval, even when closed) longer than it ought to and does not recreate it if the streams get closed. The solution is to detect when either the stdout or stderr stream for the output window is in an error state and recreate the output window.
Fixed. http://hg.netbeans.org/main/rev/46b341f42ba3 Please wait for integration notice.
Integrated into 'main-golden', will be available in build *200810100201* on http://bits.netbeans.org/dev/nightly/ (upload may still be in progress) Changeset: http://hg.netbeans.org/main/rev/46b341f42ba3 User: pcw@netbeans.org Log: #148768 V3 output stops working for duration of IDE session.