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As it is now DLightIndicators show up in Output pane and is brought up in background. It should come up in Navigator pane by default and jump into the front right away.
Fixed in changeset http://hg.netbeans.org/main/rev/1ddf66e9c02d
Integrated into 'main-golden', will be available in build *200903181604* on http://bits.netbeans.org/dev/nightly/ (upload may still be in progress) Changeset: http://hg.netbeans.org/main/rev/1ddf66e9c02d User: Alexey Vladykin <alexey_vladykin@netbeans.org> Log: #160168 Indicators Window must be brought in front in Navigator pane