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[ BUILD # : 200905160201 ] [ JDK VERSION : 1.6.* ] Generating a new project and specifying the JavaDB generates a database.yml file looking for jdbcmysql driver when access via jdbc is selected.
Updated: Following additional testing, it appears that the problem is actually the project creation wizard does not remember all of the database settings for page 2 if you backtrack to page 1. The database type is forgotten, but the database parameters (name,user,password) are.
Created attachment 82358 [details] Screen Capture
Disregard screenshot.png (I hate issuezilla's "let's go to next error" when you submit changes)
This is a valid issue, but has to wait for the next release.