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The new hint in Class Structure -> Protected member in final class' description is: Reports any instances of members being declared protected in classes that are declared final. Such members may be declared private or package-visible instead. However, this reasoning is broken if we are talking about an overridden method that is declared protected in the superclass. In the final subclass, you can either keep it protected or make it public. Therefore, the hint is useless for these scenarios and shouldn't been shown for them.
Fixed: http://hg.netbeans.org/jet-main/rev/ffdf00cd0f4e
Integrated into 'main-golden', will be available in build *201003200200* on http://bits.netbeans.org/dev/nightly/ (upload may still be in progress) Changeset: http://hg.netbeans.org/main/rev/ffdf00cd0f4e User: Jan Lahoda <jlahoda@netbeans.org> Log: #181723: protected methods overriding protected methods inside final class are OK.