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Scanning of a project should be limited only to the files which are included in the project and ignore the files which are excluded. Currently scanning is triggered by a modification of a file which is explicitly excluded from the project but happens to be unde the project's source folder.
Already fixed jet-main 7f44b6f311a0. Please when ever you report an issue to language infrastructure add a name of the language and type of the project you are using. I've suppose it was java, if not create a new issue on the concrete language like php, ruby, etc.