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Product Version = NetBeans IDE Dev (Build 201110310600) Operating System = Windows 7 version 6.1 running on x86 Java; VM; Vendor = 1.7.0_01 Runtime = Java HotSpot(TM) Client VM 21.1-b02 I tried to change the Breakpoint color to orange so it stands out from the deleted (versioning) color. First I had to close and open the document to see the change. Second I was expecting the gutter color to change as well but it didn't (bar in right side of editor where you can click for a shortcut to the colored line)
Reproduced.
This old bug may not be relevant anymore. If you can still reproduce it in 8.2 development builds please reopen this issue. Thanks for your cooperation, NetBeans IDE 8.2 Release Boss