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After I used the FinishSessions debug command (and dismissed the dialog prompting me for a session to finish, of which I had one) the IDE hung. I wasn't able to reproduce this.
Created attachment 12622 [details] ide.log file
I cannot see the deadlock in the log file and I cannot reproduce it either. I mark this issue as incomplete. If this happens again, please attach a thread dump, we may find out more from that. I, however, fixed an assertion error from window system that I saw appeared in your log. /cvs/debuggerjpda/src/org/netbeans/modules/debugger/jpda/JPDADebugger. java,v <-- JPDADebugger.java new revision: 1.124; previous revision: 1.123
closing incomplete bug
Verified ... and Closing all issues resolved into NetBeans 6.7 and earlier.