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When you start a server, the chidren of the target node are nicely added in the Run time Tab. However, when the Stop Server command is invoked, the server is stopped, but you still see the chidren nodes in the explorer Is is possible that a refresh tree been issued when J2EEServer module stops a server?
The children of manager/target node should be folded when server stop to prevent users from accessing them while they are not available which might cause exceptions. I will take care of this.
This has been already fixed for sometime.