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When you deploy an enterprise application that contains an EJB module to the application server, you can browse to that application in the Runtime window of NetBeans and see all the EJBs that are part of that module. If you deploy the EJB module by itself, you cannot see the individual EJBs in the Runtime window. Initially I thought that this was a SJSAS problem, but you CAN see the EJB components if you use the admin console.
-> sunappserv
Fix for Issue 77120 http://www.netbeans.org/issues/show_bug.cgi?id=77120 resolves this. Now the sub compents of EJBModule are listed in the runtime.