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New Web Application Wizard Doesn't Offer Java EE 5 as an option for JBoss 4.0. The workaround is to choose J2EE 1.4. The Java EE 5 wizards are still availble once the project is created.
JBoss does not support all the Java EE 5 features in the area of a web application development, thus NB does not offer to create a Java EE 5 Web project with JBoss as a target server. Reassigning to Pavel if he wants to add some comment.
Libor is right. I actually had to do special work to disable it :-)