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Steps to reproduce. - create EAR project - delete war (sub)project - delete ejb (sub)project - delete EAR project nbproject directory isn't removed.
For me the deletion of EAR project (step 4) also failes since it depends on existence of ejb's build script - and this is probably the reason why the deletion is unsuccessfull. Not clear if the same happens to you - probably it does(?)
Yes, it's the same.
Actually the problem is that this scenario leads to sometime, relatively often to deadlock. If it the deadlock is not reached the project is cleaned successfully.
Created attachment 31960 [details] deadlock
Fixed. ui/J2eeArchiveLogicalViewProvider.java; 1.7.2.2.2.6 -> 1.7.2.2.2.7;
Verified NetBeans 5.5Dev 200607280000