Adding Glasfish as application server under Netbeans 6.0 will throws:

Annotation: While scanning: jar:file:/C:/server/glassfish/lib/webservices-rt.jar!/
Annotation: While scanning: jar:file:/C:/server/glassfish/lib/webservices-rt.jar!/
Annotation: While scanning: jar:file:/C:/server/glassfish/lib/webservices-rt.jar!/
org.netbeans.modules.classfile.InvalidClassFileAttributeException: invalid
RuntimeInvisibleParameterAnnotations attribute
	at
org.netbeans.modules.classfile.Parameter.loadParameterAnnotations(Parameter.java:76)
	at org.netbeans.modules.classfile.Parameter.<init>(Parameter.java:59)
	at org.netbeans.modules.classfile.Parameter.createParameter(Parameter.java:51)
	at org.netbeans.modules.classfile.Parameter.access$000(Parameter.java:40)
	at org.netbeans.modules.classfile.Parameter$ParamIterator.next(Parameter.java:216)
	at org.netbeans.modules.classfile.Parameter.makeParams(Parameter.java:45)
	at org.netbeans.modules.classfile.Method.getParameters(Method.java:147)
	at
org.netbeans.modules.java.source.usages.BinaryAnalyser.performAnalyse(BinaryAnalyser.java:324)
	at
org.netbeans.modules.java.source.usages.BinaryAnalyser.analyse(BinaryAnalyser.java:219)
	at
org.netbeans.modules.java.source.usages.BinaryAnalyser.analyseArchive(BinaryAnalyser.java:179)
	at
org.netbeans.modules.java.source.usages.BinaryAnalyser.access$400(BinaryAnalyser.java:71)
	at
org.netbeans.modules.java.source.usages.BinaryAnalyser$1.run(BinaryAnalyser.java:114)
	at
org.netbeans.modules.java.source.usages.BinaryAnalyser$1.run(BinaryAnalyser.java:94)
	at
org.netbeans.modules.java.source.usages.ClassIndexManager.writeLock(ClassIndexManager.java:49)
	at
org.netbeans.modules.java.source.usages.BinaryAnalyser.analyse(BinaryAnalyser.java:93)
	at
org.netbeans.modules.java.source.usages.RepositoryUpdater$CompileWorker.scanRoots(RepositoryUpdater.java:860)
	at
org.netbeans.modules.java.source.usages.RepositoryUpdater$CompileWorker.access$1400(RepositoryUpdater.java:600)
	at
org.netbeans.modules.java.source.usages.RepositoryUpdater$CompileWorker$1.run(RepositoryUpdater.java:685)
	at
org.netbeans.modules.java.source.usages.RepositoryUpdater$CompileWorker$1.run(RepositoryUpdater.java:624)
	at
org.netbeans.modules.java.source.usages.ClassIndexManager.writeLock(ClassIndexManager.java:49)
	at
org.netbeans.modules.java.source.usages.RepositoryUpdater$CompileWorker.run(RepositoryUpdater.java:621)
	at
org.netbeans.modules.java.source.usages.RepositoryUpdater$CompileWorker.run(RepositoryUpdater.java:600)
	at org.netbeans.api.java.source.JavaSource$CompilationJob.run(JavaSource.java:1084)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:885)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:907)
[catch] at java.lang.Thread.run(Thread.java:619)
Caused by: java.io.EOFException
	at java.io.DataInputStream.readUnsignedShort(DataInputStream.java:323)
	at org.netbeans.modules.classfile.Annotation.load(Annotation.java:47)
	at
org.netbeans.modules.classfile.Parameter.loadParameterAnnotations(Parameter.java:74)
	... 28 more
Caused by: While scanning: jar:file:/C:/server/glassfish/lib/webservices-rt.jar!/

Environment details:

NetBeans IDE Dev (Build 200612171900)
1.6.0; Java HotSpot(TM) Client VM 1.6.0-b105
Windows XP version 5.1 running on x86
en_US (nb); Cp1252

How to produce

+ Install the lastest netbeans 6.0 build 
+ Build Glassfish v2 M3
+ Open Netbeans 6
+ Add Glasfish as application server
+ Netbeans will do a scan and right a few minutes later a exception will be thrown.